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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
43
DNA binding
9
DNA accessibility
Target of assay
38
transcription factor
8
RNA binding protein
7
chromatin remodeller
3
control
histone
1
histone modification
1
narrow histone mark
Date released
26
December, 2018
17
January, 2019
November, 2018
8
January, 2021
1
January, 2018
Available data
43
bam
43
fastq
41
bigWig
40
bed narrowPeak
40
bigBed narrowPeak
Organism
52
Homo sapiens
Biosample type
44
cell line
8
primary cell
Organ
787
pancreas
609
liver
605
connective tissue
458
adipose tissue
430
epithelium
323
kidney
296
heart
164
vasculature
159
blood vessel
159
bone element
121
artery
96
brain
73
limb
63
musculature of body
58
eye
52
blood
52
bodily fluid
25
embryo
20
lung
19
nerve
18
ureter
16
skeleton
10
spleen
6
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
8
T1D
Genome assembly (visualization)
41
hg19
40
GRCh38
Lab
44
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
inconsistent control
assay_title!
FAIRE-seq
audit.ERROR.category!
inconsistent control
month_released!
November, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
43
1
primary cell
peripheral blood mononuclear cell
8
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