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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
36
DNase-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
75
DNA binding
53
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
histone
50
histone modification
50
transcription factor
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
9
chromatin remodeller
Date released
32
June, 2019
26
December, 2018
26
October, 2019
17
January, 2019
15
November, 2018
8
January, 2021
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
1
May, 2019
Available data
124
bam
96
bed narrowPeak
96
bigWig
88
bigBed narrowPeak
58
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
140
Homo sapiens
Biosample type
73
tissue
59
cell line
8
primary cell
Organ
793
pancreas
662
liver
606
connective tissue
459
adipose tissue
430
epithelium
323
kidney
296
heart
164
vasculature
159
blood vessel
159
bone element
121
artery
98
brain
73
limb
67
blood
67
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
6
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
8
T1D
Genome assembly (visualization)
101
GRCh38
101
hg19
Lab
132
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
inconsistent control
1
inconsistent ontology term
assay_title!
FAIRE-seq
audit.ERROR.category!
inconsistent control
target.investigated_as!
histone
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
2
1
5
muscle of arm
17
muscle of leg
1
13
1
tibial artery
5
2
1
1
gastrocnemius medialis
1
4
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cell line
GM12878
58
1
primary cell
peripheral blood mononuclear cell
8
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