Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
64
ChIP-seq
28
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
whole genome sequencing assay
Assay category
108
Transcription
64
DNA binding
30
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
24
transcription factor
22
histone
22
histone modification
21
control
11
broad histone mark
11
narrow histone mark
7
recombinant protein
3
nucleotide modification
2
RNA binding protein
Date released
95
February, 2021
44
August, 2021
30
October, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
November, 2020
5
February, 2023
1
January, 2018
1
May, 2020
Available data
581
bam
522
bigWig
fastq
403
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
230
Homo sapiens
Biosample type
2396
tissue
678
primary cell
253
in vitro differentiated cells
230
cell line
4
stem cell
Organ
91
pancreas
78
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
33
liver
19
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
221
AMP
9
T1D
Genome assembly (visualization)
162
hg19
142
GRCh38
Lab
185
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
92
inconsistent ontology term
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_title!
FAIRE-seq
audit.ERROR.category!
inconsistent replicate
files.file_type!
fastq
BIOSAMPLE
ASSAY
230 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
DNase-seq
HiChIP
whole genome sequencing assay
cell line
EndoC_BH1
33
15
19
6
3
1
2
2
smooth muscle cell of the coronary artery
52
6
8
HepG2
9
18
2
2
1
1
Panc1
13
1
1
H1-hESC
8
+ See 12 more…
See all biosamples
Download