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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
Hi-C
1
WGBS
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
3
February, 2020
March, 2020
1
July, 2019
Available data
178
bam
bigWig
128
bed narrowPeak
78
bigBed narrowPeak
66
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
77
Homo sapiens
Biosample type
61
tissue
10
cell line
6
primary cell
Organ
319
pancreas
222
epithelium
221
kidney
166
liver
164
heart
112
connective tissue
101
bone element
78
vasculature
77
blood vessel
65
adipose tissue
62
brain
56
artery
55
eye
31
limb
25
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
8
embryo
8
spleen
6
vein
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
77
AMP
Genome assembly (visualization)
43
GRCh38
9
hg19
Lab
77
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
FAIRE-seq
audit.ERROR.category!
inconsistent replicate
files.file_type!
bigWig
month_released!
March, 2020
BIOSAMPLE
ASSAY
77 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
tissue
coronary artery
35
2
1
aorta
2
4
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
1
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