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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
7
single cell RNA-seq
4
DNase-seq
Assay category
24
DNA binding
7
Transcription
4
DNA accessibility
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
3
RNA binding protein
3
transcription factor
2
control
Date released
22
June, 2019
6
July, 2018
4
December, 2017
2
May, 2019
1
June, 2018
Available data
211
bam
192
bigWig
150
tsv
85
txt
62
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
35
Homo sapiens
Biosample type
30
primary cell
4
in vitro differentiated cells
1
tissue
Organ
10
connective tissue
10
epithelium
8
musculature of body
5
kidney
5
pancreas
4
embryo
4
heart
1
limb
1
vasculature
Project
35
AMP
Genome assembly (visualization)
33
GRCh38
33
hg19
Lab
35
AMP-T2D consortium
Audit category:
35
inconsistent ontology term
28
inconsistent control
27
audit script error
Audit category:
1
inconsistent control read length
assay_title!
FAIRE-seq
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
single cell RNA-seq
DNase-seq
primary cell
skeletal muscle satellite cell
7
mesenchymal stem cell
6
cardiac fibroblast
3
1
epithelial cell of proximal tubule
2
1
co-expressing pancreatic endocrine cell
2
+ See 5 more…
in vitro differentiated cells
Hepatic endoderm
4
tissue
muscle of leg
1
See all biosamples
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