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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
FAIRE-seq
Assay category
254
DNA binding
89
Transcription
15
DNA methylation
10
DNA accessibility
Target of assay
180
histone modification
179
histone
102
broad histone mark
76
narrow histone mark
50
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
396
November, 2017
368
August, 2017
341
May, 2020
319
August, 2021
312
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
106
July, 2019
93
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
244
fastq
239
bam
229
bigWig
137
bed narrowPeak
89
tsv
83
tagAlign
39
bed broadPeak
38
bigBed narrowPeak
19
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
362
Homo sapiens
Biosample type
260
tissue
63
in vitro differentiated cells
45
primary cell
Organ
164
pancreas
108
connective tissue
54
liver
45
adipose tissue
29
epithelium
26
musculature of body
Project
368
AMP
Genome assembly (visualization)
233
hg19
207
GRCh38
Lab
368
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
368 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
tissue
islet of Langerhans
32
89
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
13
+ See 3 more…
in vitro differentiated cells
adipocyte
62
1
primary cell
skeletal muscle myoblast
13
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
See all biosamples
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