Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
214
ChIP-seq
161
ATAC-seq
135
single cell RNA-seq
35
snATAC-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
FAIRE-seq
Assay category
384
Transcription
214
DNA binding
199
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
177
histone
177
histone modification
93
broad histone mark
84
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
88
February, 2023
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
40
September, 2020
33
August, 2017
31
July, 2019
31
June, 2019
29
October, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
568
bigWig
564
bam
365
fastq
270
tsv
262
bed narrowPeak
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
841
Homo sapiens
Biosample type
2571
tissue
841
primary cell
590
cell line
387
in vitro differentiated cells
10
stem cell
Organ
282
epithelium
222
pancreas
33
connective tissue
26
kidney
24
vasculature
22
blood vessel
17
vein
13
musculature of body
12
liver
10
brain
10
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
465
AMP
204
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
541
hg19
447
GRCh38
Lab
430
AMP-T2D consortium
239
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bigBed broadPeak
zippedFastqFolder
BIOSAMPLE
ASSAY
841 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
21
13
10
12
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 88 more…
See all biosamples
Download