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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
221
total RNA-seq
147
ATAC-seq
134
single cell RNA-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
FAIRE-seq
Assay category
357
Transcription
235
DNA binding
213
DNA accessibility
17
DNA methylation
10
3D chromatin structure
Target of assay
193
histone
193
histone modification
101
broad histone mark
92
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
88
February, 2023
55
June, 2019
48
February, 2021
48
July, 2018
47
August, 2017
43
April, 2018
September, 2018
40
September, 2020
33
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
528
bigWig
524
bam
324
fastq
248
bed narrowPeak
244
tsv
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
Organism
849
Homo sapiens
Biosample type
2747
tissue
849
primary cell
649
cell line
388
in vitro differentiated cells
10
stem cell
Organ
264
epithelium
182
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
473
AMP
204
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
543
hg19
452
GRCh38
Lab
438
AMP-T2D consortium
239
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
zippedFastqFolder
month_released!
September, 2018
BIOSAMPLE
ASSAY
849 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
42
10
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
11
6
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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