Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
72
ATAC-seq
71
ChIP-seq
70
single cell RNA-seq
47
WGBS
18
DNase-seq
8
snATAC-seq
7
Hi-C
6
RRBS
FAIRE-seq
Assay category
163
Transcription
98
DNA accessibility
71
DNA binding
53
DNA methylation
7
3D chromatin structure
Target of assay
45
histone
45
histone modification
24
narrow histone mark
21
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
40
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
32
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
8
January, 2021
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
220
bam
217
fastq
209
bigWig
116
tsv
84
bed narrowPeak
80
zippedFastqFolder
60
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
Organism
392
Homo sapiens
Biosample type
392
primary cell
140
cell line
24
in vitro differentiated cells
15
tissue
Organ
384
epithelium
302
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
232
AMP
152
HPAP
8
T1D
Genome assembly (visualization)
205
hg19
204
GRCh38
Lab
232
AMP-T2D consortium
152
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
FAIRE-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
392 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
Hi-C
RRBS
primary cell
pancreatic alpha cell
52
35
13
12
31
1
pancreatic beta cell
21
23
13
12
16
1
pancreatic acinar cell
4
9
12
1
endothelial cell of umbilical vein
17
2
2
pancreatic ductal cell
4
4
10
+ See 20 more…
See all biosamples
Download