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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
2
RNA microarray
FAIRE-seq
1
single cell RNA-seq
Assay category
154
DNA binding
90
Transcription
14
DNA methylation
4
DNA accessibility
Target of assay
120
histone modification
119
histone
72
broad histone mark
47
narrow histone mark
29
control
5
transcription factor
1
RNA binding protein
Date released
545
February, 2021
261
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
75
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
25
November, 2018
19
April, 2020
19
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
155
bigWig
152
fastq
147
bam
91
tsv
64
bed narrowPeak
59
tagAlign
26
bed broadPeak
21
bigBed narrowPeak
12
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
Organism
257
Homo sapiens
Biosample type
264
tissue
65
in vitro differentiated cells
52
primary cell
Organ
136
pancreas
54
liver
45
adipose tissue
45
connective tissue
26
musculature of body
3
kidney
1
epithelium
Project
264
AMP
Genome assembly (visualization)
157
hg19
136
GRCh38
Lab
264
AMP-T2D consortium
Audit category:
2
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
264 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
tissue
islet of Langerhans
32
89
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
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