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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
FAIRE-seq
Assay category
180
DNA binding
89
Transcription
9
DNA accessibility
2
DNA methylation
Target of assay
102
histone modification
101
histone
51
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
388
November, 2017
283
May, 2020
280
August, 2017
277
May, 2021
249
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
82
November, 2018
80
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
0
February, 2023
Available data
361
fastq
280
bam
273
bigWig
205
bed narrowPeak
105
tsv
85
tagAlign
41
bed broadPeak
40
bigBed narrowPeak
37
bed bed3+
15
bigBed broadPeak
10
bed bed3
7
txt
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bedgraph
Organism
273
Homo sapiens
Biosample type
169
tissue
57
primary cell
54
in vitro differentiated cells
Organ
167
pancreas
71
connective tissue
29
epithelium
26
liver
17
adipose tissue
Project
280
AMP
Genome assembly (visualization)
250
hg19
248
GRCh38
Lab
280
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
inconsistent control run_type
assay_title!
FAIRE-seq
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
280 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
22
89
1
liver
25
pancreas
14
white adipose tissue
12
adipose tissue
2
2
+ See 2 more…
primary cell
skeletal muscle myoblast
14
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
53
1
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