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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
65
total RNA-seq
36
DNase-seq
14
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
65
Transcription
50
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
66
February, 2021
32
June, 2019
7
May, 2019
5
July, 2019
4
February, 2023
3
February, 2020
1
May, 2021
Available data
174
bam
149
bigWig
94
bed narrowPeak
txt
84
bigBed narrowPeak
65
tsv
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
187
Homo sapiens
Biosample type
186
tissue
1
primary cell
Organ
791
liver
786
pancreas
684
connective tissue
491
adipose tissue
393
heart
371
epithelium
291
kidney
285
brain
235
vasculature
229
blood vessel
141
artery
122
limb
95
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
186
AMP
1
T1D
Genome assembly (visualization)
160
hg19
156
GRCh38
Lab
186
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
FAIRE-seq
award.project!
HPAP
files.file_type!
txt
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone tissue
58
tibial nerve
35
5
2
1
tibial artery
23
1
2
1
muscle of leg
7
13
1
muscle of arm
17
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primary cell
megakaryocyte
1
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