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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
606
ChIP-seq
168
DNase-seq
43
ATAC-seq
16
small RNA-seq
10
WGBS
6
single cell RNA-seq
FAIRE-seq
Assay category
917
Transcription
606
DNA binding
211
DNA accessibility
10
DNA methylation
Target of assay
520
histone modification
519
histone
266
narrow histone mark
253
broad histone mark
86
transcription factor
27
RNA binding protein
2
chromatin remodeller
Date released
444
February, 2021
177
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
61
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
November, 2018
20
May, 2022
19
November, 2019
14
October, 2017
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1876
bam
1744
bigWig
1076
tsv
962
bed narrowPeak
541
bigBed narrowPeak
350
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1738
Homo sapiens
Biosample type
1744
tissue
461
cell line
422
primary cell
259
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
363
pancreas
258
liver
199
brain
157
heart
91
limb
90
kidney
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
10
spleen
3
eye
1
pituitary gland
Project
1744
AMP
2
T1D
Genome assembly (visualization)
1688
GRCh38
1625
hg19
Lab
1683
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
1744 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
27
1
3
6
liver
147
78
20
1
bone tissue
58
left cardiac atrium
40
1
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