Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
2
DNase-seq
2
Hi-C
1
ATAC-seq
FAIRE-seq
Assay category
61
DNA binding
3
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
16
histone
histone modification
10
RNA binding protein
10
chromatin remodeller
9
broad histone mark
8
control
7
narrow histone mark
Date released
27
December, 2018
17
January, 2019
15
November, 2018
5
October, 2019
1
January, 2018
1
March, 2020
Available data
63
bam
59
fastq
56
bigWig
55
bed narrowPeak
55
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
Organism
66
Homo sapiens
Biosample type
60
cell line
6
primary cell
Organ
688
liver
611
pancreas
605
connective tissue
459
adipose tissue
296
heart
276
epithelium
276
kidney
164
vasculature
159
blood vessel
158
bone element
121
artery
98
brain
73
limb
63
musculature of body
60
blood
60
bodily fluid
58
eye
25
embryo
19
nerve
19
spleen
18
ureter
16
skeleton
6
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
66
AMP
8
T1D
Genome assembly (visualization)
58
hg19
55
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent control
assay_title!
FAIRE-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
66 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
ATAC-seq
cell line
GM12878
59
1
primary cell
endothelial cell of umbilical vein
2
2
2
Download