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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
76
ATAC-seq
69
DNase-seq
64
single cell RNA-seq
54
total RNA-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
151
DNA accessibility
119
Transcription
97
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
59
transcription factor
21
histone
21
histone modification
15
control
11
RNA binding protein
11
narrow histone mark
10
broad histone mark
10
chromatin remodeller
7
recombinant protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
27
December, 2018
23
April, 2019
19
October, 2019
18
January, 2019
15
November, 2018
14
May, 2023
8
February, 2021
3
December, 2019
3
July, 2019
2
March, 2020
1
January, 2018
Available data
214
bed narrowPeak
172
bam
157
bigWig
141
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
60
fastq
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
378
Homo sapiens
Biosample type
298
tissue
80
cell line
primary cell
Organ
777
liver
645
connective tissue
598
pancreas
489
adipose tissue
380
heart
317
kidney
264
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
331
AMP
47
KPMP
Genome assembly (visualization)
231
GRCh38
158
hg19
Lab
187
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
1
inconsistent control
assay_title!
FAIRE-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
378 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
kidney
27
75
13
64
49
6
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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cell line
GM12878
60
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
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