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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
30
DNase-seq
10
RRBS
1
WGBS
Assay category
79
DNA binding
30
DNA accessibility
11
DNA methylation
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
24
June, 2019
16
August, 2017
9
July, 2019
5
October, 2019
1
November, 2018
1
November, 2020
Available data
1484
bam
1396
bigWig
981
fastq
832
bed narrowPeak
524
tsv
480
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
3
tar
2
csv
2
ibed
1
vcf
Organism
120
Homo sapiens
Biosample type
tissue
60
cell line
59
primary cell
1
in vitro differentiated cells
Organ
62
liver
28
epithelium
13
kidney
13
vasculature
12
brain
8
blood vessel
8
connective tissue
4
heart
4
vein
2
eye
2
musculature of body
1
pancreas
Project
120
AMP
Genome assembly (visualization)
112
hg19
92
GRCh38
Lab
120
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
biosample_type!
tissue
month_released!
October, 2017
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
DNase-seq
RRBS
WGBS
cell line
HepG2
58
1
Panc1
1
primary cell
skeletal muscle myoblast
13
1
1
cardiac fibroblast
3
1
choroid plexus epithelial cell
2
1
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
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in vitro differentiated cells
adipocyte
1
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