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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
27
ChIP-seq
16
total RNA-seq
3
ATAC-seq
1
Hi-C
Assay category
56
Transcription
27
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
25
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
71
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
69
fastq
30
bigWig
27
bam
27
bed narrowPeak
27
bigBed narrowPeak
19
zippedFastqFolder
Organism
87
Homo sapiens
Biosample type
59
primary cell
28
cell line
tissue
Organ
27
blood
27
bodily fluid
19
epithelium
19
pancreas
1
liver
Project
59
HPAP
28
AMP
Genome assembly (visualization)
30
GRCh38
27
hg19
Lab
59
Klaus Kaestner, Upenn
28
AMP-T2D consortium
Audit category:
1
inconsistent control
assay_title!
FAIRE-seq
biosample_type!
tissue
month_released!
April, 2020
BIOSAMPLE
ASSAY
87 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
cell line
GM12878
27
HepG2
1
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