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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
total RNA-seq
100
single cell RNA-seq
13
ATAC-seq
6
WGBS
5
pCHi-C
2
small RNA-seq
Assay category
359
Transcription
13
DNA accessibility
6
DNA methylation
Target of assay
3
control
Date released
85
February, 2021
56
May, 2021
48
July, 2018
46
May, 2020
43
April, 2018
26
September, 2018
18
July, 2019
17
August, 2021
12
February, 2023
9
March, 2020
October, 2019
5
December, 2019
5
January, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2019
Available data
1131
bam
1092
bigWig
836
fastq
663
bed narrowPeak
443
bigBed narrowPeak
383
tsv
153
zippedFastqFolder
120
tagAlign
103
bed broadPeak
103
bigBed broadPeak
36
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
7
hic
6
bedpe bed3+
4
hdf5
3
cool
3
tar
2
bed bed3
2
csv
1
txt
1
vcf
Organism
383
Homo sapiens
Biosample type
1068
tissue
268
primary cell
129
in vitro differentiated cells
115
cell line
4
stem cell
Organ
148
epithelium
142
pancreas
56
heart
54
artery
54
blood vessel
54
vasculature
20
liver
15
connective tissue
8
embryo
6
kidney
3
brain
2
adipose tissue
2
musculature of body
1
mammary gland
1
pericardium
Project
279
AMP
98
T1D
6
HPAP
Genome assembly (visualization)
351
hg19
350
GRCh38
Lab
272
AMP-T2D consortium
96
Kyle Gaulton, UCSD
9
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
Audit category:
53
inconsistent ontology term
assay_title!
FAIRE-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
383 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
+ See 58 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
HepG2
14
1
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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