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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
459
ChIP-seq
44
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
459
DNA binding
44
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
345
transcription factor
89
recombinant protein
74
control
64
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
61
November, 2018
29
February, 2021
29
October, 2019
27
December, 2018
23
January, 2019
15
November, 2019
August, 2021
5
March, 2020
5
May, 2021
Available data
508
bam
444
bigWig
427
fastq
378
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
50
tsv
14
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
508
Homo sapiens
Biosample type
1771
tissue
592
primary cell
508
cell line
253
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
heart
66
vasculature
63
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
Project
504
AMP
4
T1D
Genome assembly (visualization)
437
hg19
391
GRCh38
Lab
508
AMP-T2D consortium
Audit category:
62
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
FAIRE-seq
month_released!
August, 2021
organ_slims!
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BIOSAMPLE
ASSAY
508 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
GM12878
60
EndoC_BH1
15
33
1
Panc1
13
1
RCC 7860 HIF1a re-expression
4
1
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