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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
3
ATAC-seq
1
Hi-C
Assay category
14
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
14
August, 2021
2
March, 2020
1
January, 2018
1
October, 2019
Available data
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
18
Homo sapiens
Biosample type
88
tissue
49
primary cell
18
cell line
16
in vitro differentiated cells
1
stem cell
Organ
14
liver
3
pancreas
2
epithelium
1
blood
1
bodily fluid
Project
18
AMP
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
14
Bing Ren, UCSD
4
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
FAIRE-seq
files.file_type!
bam
BIOSAMPLE
ASSAY
18 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
cell line
HepG2
14
EndoC_BH1
2
GM12878
1
Panc1
1
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