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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
131
total RNA-seq
27
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
161
DNA binding
133
Transcription
28
DNA accessibility
4
3D chromatin structure
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
85
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
11
February, 2023
8
March, 2020
8
October, 2019
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
286
bam
254
bigWig
141
fastq
131
tsv
127
bed narrowPeak
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
337
Homo sapiens
Biosample type
2676
tissue
847
primary cell
640
cell line
337
in vitro differentiated cells
10
stem cell
Organ
92
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
337
AMP
Genome assembly (visualization)
282
hg19
260
GRCh38
4
hg18
Lab
330
AMP-T2D consortium
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
FAIRE-seq
files.file_type!
bed bed3
lab.title!
Kyle Gaulton, UCSD
month_released!
November, 2019
BIOSAMPLE
ASSAY
337 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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