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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
246
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
1
DNAme array
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
286
DNA accessibility
269
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
33
October, 2019
28
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
November, 2018
Available data
601
bigWig
595
bam
409
fastq
285
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
1072
Homo sapiens
Biosample type
2691
tissue
1072
primary cell
662
cell line
394
in vitro differentiated cells
stem cell
Organ
405
epithelium
346
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
544
AMP
324
HPAP
204
T1D
Genome assembly (visualization)
615
hg19
524
GRCh38
Lab
509
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
biosample_type!
stem cell
lab.title!
ITG
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
1072 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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