Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1262
total RNA-seq
1166
ChIP-seq
456
ATAC-seq
327
single cell RNA-seq
208
DNase-seq
87
RNA microarray
84
snATAC-seq
72
WGBS
41
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1607
Transcription
1166
DNA binding
748
DNA accessibility
94
DNA methylation
26
3D chromatin structure
Target of assay
859
histone modification
858
histone
437
narrow histone mark
421
broad histone mark
214
control
98
transcription factor
38
RNA binding protein
3
chromatin remodeller
2
nucleotide modification
Date released
593
February, 2021
342
August, 2017
340
May, 2020
275
October, 2019
246
May, 2021
233
August, 2021
218
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
120
May, 2019
106
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
September, 2020
49
April, 2018
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2024
40
November, 2019
25
February, 2020
22
October, 2017
19
April, 2020
17
November, 2018
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
March, 2023
Available data
2487
bam
2361
bigWig
1345
tsv
1260
bed narrowPeak
719
fastq
652
bigBed narrowPeak
338
tagAlign
261
bed broadPeak
241
bed bed3+
224
bigBed broadPeak
157
txt
134
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
Organism
3767
Homo sapiens
Biosample type
2748
tissue
1028
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
830
pancreas
586
connective tissue
490
adipose tissue
401
epithelium
375
liver
334
kidney
326
heart
285
brain
169
vasculature
163
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
spleen
21
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3209
AMP
265
HPAP
235
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
2376
GRCh38
2364
hg19
Lab
2919
AMP-T2D consortium
291
Kyle Gaulton, UCSD
265
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
145
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
month_released!
September, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
3776 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
292
71
68
6
1
7
4
3
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
+ See 175 more…
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
37
13
33
12
31
1
Langerhans cell
45
48
pancreatic beta cell
20
13
22
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
+ See 94 more…
See all biosamples
Download