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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
246
total RNA-seq
199
ATAC-seq
173
single cell RNA-seq
41
WGBS
31
DNase-seq
29
snATAC-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
FAIRE-seq
Assay category
421
Transcription
269
DNA binding
259
DNA accessibility
52
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
72
September, 2018
59
September, 2020
57
August, 2017
51
June, 2019
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
600
bigWig
595
bam
359
fastq
283
bed narrowPeak
263
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
Organism
1027
Homo sapiens
Biosample type
2134
tissue
1027
primary cell
319
in vitro differentiated cells
210
cell line
10
stem cell
Organ
394
epithelium
340
pancreas
35
connective tissue
34
kidney
34
vasculature
29
blood vessel
21
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
543
AMP
279
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
614
hg19
525
GRCh38
Lab
508
AMP-T2D consortium
279
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
files.file_type!
csv
month_released!
February, 2021
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1027 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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