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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
single cell RNA-seq
28
DNase-seq
21
ChIP-seq
12
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
252
Transcription
40
DNA accessibility
21
DNA binding
6
DNA methylation
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
3
control
1
chromatin remodeller
Date released
52
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
24
June, 2019
18
July, 2019
14
August, 2017
12
February, 2023
7
February, 2021
6
November, 2017
6
October, 2019
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
612
bigWig
608
bam
409
fastq
294
bed narrowPeak
270
tsv
153
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
319
Homo sapiens
Biosample type
1289
tissue
319
primary cell
178
cell line
132
in vitro differentiated cells
4
stem cell
Organ
138
epithelium
108
pancreas
21
connective tissue
16
kidney
14
brain
14
vasculature
10
blood vessel
7
heart
7
liver
4
vein
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
217
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
297
GRCh38
294
hg19
Lab
217
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
319 results
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total RNA-seq
single cell RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
skeletal muscle myoblast
1
1
13
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