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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
39
ATAC-seq
27
DNase-seq
Assay category
216
DNA binding
66
DNA accessibility
Target of assay
206
histone
206
histone modification
107
broad histone mark
99
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
47
June, 2019
46
September, 2018
33
August, 2017
8
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
598
bigWig
589
bam
409
fastq
282
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
282
Homo sapiens
Biosample type
980
tissue
404
cell line
282
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
105
epithelium
68
pancreas
22
kidney
20
vasculature
17
connective tissue
16
blood vessel
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
198
AMP
84
T1D
Genome assembly (visualization)
275
hg19
249
GRCh38
Lab
168
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
organ_slims!
vein
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
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