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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
single cell RNA-seq
120
total RNA-seq
94
ChIP-seq
71
ATAC-seq
48
snATAC-seq
47
WGBS
1
DNase-seq
1
RRBS
Assay category
299
Transcription
120
DNA accessibility
94
DNA binding
48
DNA methylation
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
76
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
48
July, 2018
45
February, 2021
38
April, 2018
9
November, 2017
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
590
bigWig
578
bam
409
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
Organism
561
Homo sapiens
Biosample type
561
primary cell
427
cell line
375
tissue
141
in vitro differentiated cells
4
stem cell
Organ
338
pancreas
318
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
321
HPAP
240
AMP
Genome assembly (visualization)
229
GRCh38
226
hg19
Lab
321
Klaus Kaestner, Upenn
240
AMP-T2D consortium
Audit category:
27
audit script error
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
month_released!
October, 2019
BIOSAMPLE
ASSAY
561 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
12
52
13
35
31
Langerhans cell
85
48
pancreatic beta cell
12
21
13
23
16
exocrine cell
39
pancreatic acinar cell
9
4
8
9
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