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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
6
DNase-seq
4
Hi-C
2
total RNA-seq
FAIRE-seq
1
RRBS
Assay category
14
DNA binding
6
DNA accessibility
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
17
histone
17
histone modification
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
11
October, 2019
6
November, 2017
5
July, 2019
4
June, 2019
1
March, 2020
Available data
22
bam
21
bigWig
15
bed narrowPeak
15
bigBed narrowPeak
10
bed broadPeak
10
bigBed broadPeak
8
bed bed3+
6
fastq
2
hdf5
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
27
Homo sapiens
Biosample type
99
tissue
66
cell line
27
primary cell
Organ
374
epithelium
319
pancreas
35
connective tissue
31
kidney
27
vasculature
21
blood vessel
21
brain
13
heart
13
liver
12
vein
10
musculature of body
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
0
thymus
Project
27
AMP
Genome assembly (visualization)
23
hg19
17
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
FAIRE-seq
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
primary cell
endothelial cell of umbilical vein
8
2
2
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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