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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
802
total RNA-seq
752
ChIP-seq
239
ATAC-seq
174
DNase-seq
166
single cell RNA-seq
27
snATAC-seq
23
WGBS
23
pCHi-C
15
Hi-C
13
small RNA-seq
10
RRBS
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
981
Transcription
752
DNA binding
440
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
455
February, 2021
236
October, 2019
229
August, 2017
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
67
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
36
March, 2020
24
February, 2020
23
October, 2017
19
April, 2020
19
May, 2022
18
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1615
bam
1503
bigWig
921
tsv
867
bed narrowPeak
508
bigBed narrowPeak
292
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2245
Homo sapiens
Biosample type
2254
tissue
1073
primary cell
376
in vitro differentiated cells
260
cell line
10
stem cell
Organ
547
connective tissue
497
pancreas
488
adipose tissue
liver
313
heart
264
brain
236
kidney
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
70
bone element
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
2157
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1621
GRCh38
1482
hg19
Lab
2005
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
files.file_type!
txt
organ_slims!
liver
stomach
BIOSAMPLE
ASSAY
2254 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
286
71
68
1
6
7
4
3
1
4
adipose tissue
382
2
3
3
1
kidney
27
75
13
51
6
1
1
heart left ventricle
3
35
2
3
18
4
1
1
1
left cardiac atrium
40
1
18
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