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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
784
ChIP-seq
211
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
FAIRE-seq
1
DNase-seq
Assay category
923
Transcription
784
DNA binding
212
DNA accessibility
17
DNA methylation
Target of assay
523
histone modification
522
histone
268
narrow histone mark
254
broad histone mark
167
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
189
August, 2017
182
October, 2019
116
July, 2018
115
May, 2019
80
April, 2019
74
October, 2018
70
November, 2017
64
August, 2021
63
February, 2023
62
July, 2019
48
December, 2017
44
May, 2022
40
May, 2024
39
November, 2019
38
May, 2021
16
November, 2018
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1903
bam
1768
bigWig
1076
tsv
980
bed narrowPeak
557
bigBed narrowPeak
375
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1929
Homo sapiens
Biosample type
1936
tissue
589
primary cell
537
cell line
294
in vitro differentiated cells
3
stem cell
Organ
498
connective tissue
440
adipose tissue
427
pancreas
305
liver
199
brain
181
heart
117
blood vessel
117
vasculature
93
kidney
78
limb
66
bone element
65
artery
40
nerve
27
eye
25
musculature of body
23
spleen
12
epithelium
8
skeleton
1
pituitary gland
Project
1934
AMP
2
T1D
Genome assembly (visualization)
1666
GRCh38
1554
hg19
Lab
1787
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
1936 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
DNase-seq
tissue
adipose tissue
381
2
1
2
islet of Langerhans
266
36
38
6
1
liver
147
122
20
1
kidney
27
64
bone tissue
58
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