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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
971
total RNA-seq
834
ChIP-seq
173
DNase-seq
163
single cell RNA-seq
135
ATAC-seq
87
RNA microarray
25
WGBS
24
pCHi-C
22
snATAC-seq
16
small RNA-seq
14
Hi-C
11
RRBS
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1150
Transcription
834
DNA binding
330
DNA accessibility
36
DNA methylation
14
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
283
August, 2017
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
95
August, 2021
82
November, 2017
80
April, 2019
74
October, 2018
68
July, 2019
66
May, 2022
65
May, 2019
52
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
25
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1808
bam
1698
bigWig
1062
tsv
808
bed narrowPeak
495
bigBed narrowPeak
375
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
96
txt
24
bed bedMethyl
24
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2473
Homo sapiens
Biosample type
2482
tissue
1057
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
503
pancreas
488
adipose tissue
361
liver
313
heart
264
brain
158
bone element
156
kidney
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2385
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1671
GRCh38
1668
hg19
Lab
2272
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
lab.title!
Katalin Susztak, Upenn
organ_slims!
blood vessel
skeleton
BIOSAMPLE
ASSAY
2482 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
1
6
68
4
7
3
1
4
adipose tissue
382
2
3
3
1
liver
167
145
2
1
20
3
1
1
1
1
kidney
27
13
53
1
bone element
84
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