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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
887
ChIP-seq
255
ATAC-seq
180
single cell RNA-seq
177
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
FAIRE-seq
3
snDrop-seq
Assay category
1227
Transcription
887
DNA binding
460
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
177
control
88
transcription factor
28
RNA binding protein
2
chromatin remodeller
Date released
545
February, 2021
283
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
75
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
25
February, 2020
22
October, 2017
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
6
April, 2018
6
September, 2017
March, 2019
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1878
bam
1752
bigWig
1075
tsv
966
bed narrowPeak
544
bigBed narrowPeak
350
fastq
238
tagAlign
211
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2730
Homo sapiens
Biosample type
2739
tissue
1081
primary cell
656
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
494
pancreas
488
adipose tissue
361
liver
313
heart
298
kidney
264
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2642
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1841
GRCh38
1734
hg19
Lab
2396
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
month_released!
March, 2019
November, 2020
organ_slims!
spleen
BIOSAMPLE
ASSAY
2739 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snDrop-seq
tissue
islet of Langerhans
292
71
64
6
1
7
4
2
1
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
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