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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
2
RNA microarray
FAIRE-seq
1
single cell RNA-seq
Assay category
256
DNA binding
90
Transcription
14
DNA methylation
4
DNA accessibility
Target of assay
184
histone modification
183
histone
110
broad histone mark
73
narrow histone mark
43
control
29
transcription factor
6
RNA binding protein
Date released
545
February, 2021
283
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
75
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
25
November, 2018
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
248
bam
242
bigWig
174
fastq
130
bed narrowPeak
91
tsv
85
bigBed narrowPeak
59
tagAlign
26
bed bed3+
26
bed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
359
Homo sapiens
Biosample type
366
tissue
70
in vitro differentiated cells
64
primary cell
Organ
146
pancreas
57
adipose tissue
57
connective tissue
57
heart
54
liver
26
kidney
26
musculature of body
1
epithelium
Project
366
AMP
Genome assembly (visualization)
244
hg19
222
GRCh38
Lab
366
AMP-T2D consortium
Audit category:
2
audit script error
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
366 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
tissue
islet of Langerhans
42
89
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
heart left ventricle
35
skeletal muscle tissue
22
4
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