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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
2
RNA microarray
FAIRE-seq
1
single cell RNA-seq
Assay category
216
DNA binding
90
Transcription
14
DNA methylation
4
DNA accessibility
Target of assay
159
histone modification
158
histone
93
broad histone mark
65
narrow histone mark
29
control
28
transcription factor
7
RNA binding protein
Date released
545
February, 2021
283
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
75
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
25
November, 2018
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
217
bigWig
174
fastq
169
bam
105
bed narrowPeak
91
tsv
59
tagAlign
26
bed bed3+
26
bed broadPeak
21
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
319
Homo sapiens
Biosample type
326
tissue
70
in vitro differentiated cells
64
primary cell
Organ
146
pancreas
57
adipose tissue
57
connective tissue
54
liver
40
heart
26
musculature of body
3
kidney
1
epithelium
Project
326
AMP
Genome assembly (visualization)
198
GRCh38
179
hg19
Lab
286
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
2
audit script error
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
326 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
tissue
islet of Langerhans
42
89
1
liver
48
3
1
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
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