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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
82
ChIP-seq
3
ATAC-seq
1
DNase-seq
FAIRE-seq
Assay category
89
Transcription
82
DNA binding
4
DNA accessibility
Target of assay
54
histone
54
histone modification
30
narrow histone mark
24
broad histone mark
21
control
7
transcription factor
2
RNA binding protein
Date released
175
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
17
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
6
July, 2019
4
August, 2021
4
March, 2019
4
November, 2018
4
October, 2017
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
167
bam
167
fastq
158
bigWig
89
tsv
48
bed narrowPeak
19
bed bed3+
16
bigBed narrowPeak
16
tagAlign
bed broadPeak
Organism
174
Homo sapiens
Biosample type
134
tissue
41
primary cell
Organ
175
pancreas
123
connective tissue
56
adipose tissue
54
liver
29
epithelium
13
musculature of body
Project
175
AMP
Genome assembly (visualization)
146
GRCh38
146
hg19
Lab
175
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
8
inconsistent control read length
assay_title!
FAIRE-seq
files.file_type!
bed broadPeak
organ_slims!
skeleton
BIOSAMPLE
ASSAY
175 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans
89
36
1
pancreas
8
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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