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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
total RNA-seq
13
ATAC-seq
11
ChIP-seq
1
pCHi-C
Assay category
67
Transcription
13
DNA accessibility
11
DNA binding
Target of assay
11
control
Date released
150
February, 2021
16
October, 2019
8
February, 2023
1
February, 2020
1
May, 2021
Available data
108
bam
89
bigWig
88
txt
63
tsv
35
bed narrowPeak
bigBed narrowPeak
4
bed bed3
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
176
Homo sapiens
Biosample type
175
tissue
1
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
175
AMP
1
T1D
Genome assembly (visualization)
75
hg19
71
GRCh38
Lab
175
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_title!
FAIRE-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
176 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
5
1
11
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
megakaryocyte
1
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