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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
FAIRE-seq
Assay category
207
DNA binding
89
Transcription
9
DNA accessibility
2
DNA methylation
Target of assay
162
histone modification
161
histone
86
broad histone mark
74
narrow histone mark
transcription factor
45
control
12
RNA binding protein
3
chromatin remodeller
Date released
567
February, 2021
283
May, 2020
273
May, 2021
242
October, 2019
234
August, 2017
214
June, 2019
164
July, 2018
149
November, 2017
115
May, 2019
80
July, 2019
73
April, 2019
72
September, 2018
61
October, 2018
58
November, 2019
52
December, 2017
49
April, 2018
49
August, 2021
39
February, 2018
24
May, 2022
22
November, 2018
16
January, 2019
16
March, 2020
15
October, 2017
11
September, 2017
6
December, 2018
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
307
bam
284
bigWig
239
fastq
177
bed narrowPeak
98
bigBed narrowPeak
89
tsv
85
tagAlign
39
bed broadPeak
14
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
300
Homo sapiens
Biosample type
219
tissue
56
primary cell
32
in vitro differentiated cells
Organ
160
pancreas
51
heart
37
connective tissue
29
epithelium
22
kidney
22
liver
5
adipose tissue
Project
307
AMP
Genome assembly (visualization)
263
hg19
262
GRCh38
Lab
307
AMP-T2D consortium
Audit category:
16
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
307 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
15
89
1
heart left ventricle
29
kidney
22
liver
21
pancreas
14
+ See 5 more…
primary cell
skeletal muscle myoblast
13
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
31
1
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