Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 801ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • FAIRE-seq
Assay category
  • 801DNA binding
  • 236DNA accessibility
Target of assay
  • 405transcription factor
  • 391histone
  • 391histone modification
  • 242broad histone mark
  • 149narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • 72November, 2018
  • 69October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 41August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 1November, 2020
Available data
  • 3387bam
  • 3164bigWig
  • 1812bed narrowPeak
  • 1600tsv
  • 1356fastq
  • 1037bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1031Homo sapiens
Biosample type
  • 557tissue
  • 355cell line
  • 108primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • 126brain
  • 103kidney
  • 94heart
  • 89pancreas
  • 84limb
  • 82vasculature
  • 78blood vessel
  • 75epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 12vein
  • 10adipose tissue
  • 6eye
Project
  • 1037AMP
Genome assembly (visualization)
  • 998GRCh38
  • 958hg19
Lab
  • 1037AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
assay_title!
  • FAIRE-seq
BIOSAMPLE
ASSAY

1037 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
tissue
liver382
heart left ventricle283
kidney1813
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein102
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego