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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
15
Transcription
4
DNA accessibility
Date released
89
February, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
2706
bam
2542
bigWig
1426
tsv
1307
bed narrowPeak
891
fastq
679
bigBed narrowPeak
312
tagAlign
260
bed bed3+
259
bed broadPeak
222
bigBed broadPeak
153
zippedFastqFolder
104
txt
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
20
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
103
Homo sapiens
Biosample type
100
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
104
AMP
Genome assembly (visualization)
4
hg19
Lab
95
AMP-T2D consortium
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
assay_title!
FAIRE-seq
lab.title!
Katalin Susztak, Upenn
organ_slims!
liver
BIOSAMPLE
ASSAY
104 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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