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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
12
WGBS
9
RRBS
6
ATAC-seq
6
Hi-C
3
single cell RNA-seq
FAIRE-seq
Assay category
60
Transcription
21
DNA methylation
6
3D chromatin structure
6
DNA accessibility
Target of assay
3
control
Date released
683
February, 2021
400
November, 2017
381
August, 2017
313
August, 2021
296
May, 2020
279
October, 2019
198
June, 2019
138
May, 2021
135
July, 2018
130
February, 2023
115
May, 2019
96
May, 2022
93
July, 2019
87
November, 2018
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
76
bigWig
75
bam
60
tsv
17
bed bedMethyl
17
bigBed bedMethyl
5
bed narrowPeak
2
bed bed3+
2
hdf5
Organism
93
Homo sapiens
Biosample type
75
tissue
18
primary cell
Organ
25
heart
18
connective tissue
17
brain
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
93
AMP
Genome assembly (visualization)
76
hg19
74
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
FAIRE-seq
lab.title!
Kyle Gaulton, UCSD
month_released!
April, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
93 results
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total RNA-seq
small RNA-seq
WGBS
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
tissue
heart left ventricle
2
4
1
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 10 more…
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