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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
62
total RNA-seq
43
ATAC-seq
30
DNase-seq
29
ChIP-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
73
DNA accessibility
29
DNA binding
3
3D chromatin structure
Target of assay
84
histone
histone modification
50
broad histone mark
34
narrow histone mark
15
transcription factor
14
control
9
RNA binding protein
Date released
92
August, 2021
66
February, 2021
36
February, 2023
33
June, 2019
July, 2019
15
April, 2019
May, 2019
7
March, 2020
5
May, 2024
3
February, 2020
3
May, 2021
3
October, 2019
Available data
157
tsv
121
bam
104
bigWig
88
bed narrowPeak
36
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
263
Homo sapiens
Biosample type
190
tissue
66
cell line
6
primary cell
1
in vitro differentiated cells
Organ
786
pancreas
678
liver
588
connective tissue
447
adipose tissue
415
epithelium
311
kidney
263
heart
159
bone element
138
vasculature
134
blood vessel
115
artery
78
brain
68
blood
68
bodily fluid
67
limb
57
eye
52
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
6
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
263
AMP
Genome assembly (visualization)
147
GRCh38
107
hg19
Lab
258
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
assay_title!
FAIRE-seq
month_released!
July, 2019
May, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
263 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
Hi-C
pCHi-C
tissue
coronary artery
1
35
2
heart left ventricle
18
1
3
11
1
1
heart
1
2
18
2
1
left cardiac atrium
18
1
5
heart right ventricle
17
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
cardiac fibroblast
3
3
in vitro differentiated cells
cardiac fibroblast
1
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