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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
ChIP-seq
191
DNase-seq
89
total RNA-seq
6
RRBS
4
ATAC-seq
3
WGBS
FAIRE-seq
Assay category
277
DNA binding
195
DNA accessibility
89
Transcription
9
DNA methylation
Target of assay
186
histone modification
185
histone
97
broad histone mark
87
narrow histone mark
52
control
39
transcription factor
12
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
399
May, 2021
353
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
312
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
94
July, 2019
86
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
481
bam
463
bigWig
347
bed narrowPeak
268
fastq
248
bigBed narrowPeak
226
bed broadPeak
215
bed bed3+
201
bigBed broadPeak
89
tsv
77
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
Organism
563
Homo sapiens
Biosample type
388
tissue
114
primary cell
68
in vitro differentiated cells
Organ
191
pancreas
143
connective tissue
81
kidney
69
musculature of body
adipose tissue
56
liver
49
epithelium
35
heart
32
limb
30
brain
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
Project
570
AMP
Genome assembly (visualization)
446
hg19
442
GRCh38
Lab
570
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
27
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
FAIRE-seq
month_released!
February, 2020
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
570 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RRBS
ATAC-seq
WGBS
tissue
islet of Langerhans
42
1
89
liver
48
1
3
skeletal muscle tissue
22
4
heart
18
muscle of arm
17
+ See 37 more…
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
cardiac fibroblast
5
3
+ See 22 more…
in vitro differentiated cells
adipocyte
67
1
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