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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
total RNA-seq
114
ATAC-seq
65
ChIP-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
FAIRE-seq
1
pCHi-C
Assay category
255
Transcription
114
DNA accessibility
65
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
39
histone
39
histone modification
29
control
29
narrow histone mark
10
broad histone mark
Date released
715
February, 2021
410
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
313
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
106
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
378
bam
357
bigWig
254
tsv
64
tagAlign
44
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
17
fastq
6
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
hdf5
Organism
470
Homo sapiens
Biosample type
291
tissue
178
primary cell
1
cell line
Organ
204
liver
33
brain
25
heart
19
connective tissue
13
adipose tissue
13
epithelium
12
vasculature
11
blood vessel
11
pancreas
10
kidney
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
425
AMP
45
T1D
Genome assembly (visualization)
362
hg19
300
GRCh38
Lab
424
AMP-T2D consortium
45
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
10
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
FAIRE-seq
month_released!
November, 2020
BIOSAMPLE
ASSAY
470 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
pCHi-C
tissue
liver
145
50
1
brain
15
1
heart left ventricle
2
2
1
4
body of pancreas
2
4
2
omental fat pad
4
1
1
+ See 27 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 49 more…
cell line
HepG2
1
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