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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
DNase-seq
7
WGBS
4
ATAC-seq
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
70
DNA binding
13
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
211
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
117
October, 2019
106
July, 2019
87
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
88
fastq
87
bam
79
bigWig
72
bed narrowPeak
72
bigBed narrowPeak
10
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
92
Homo sapiens
Biosample type
61
cell line
30
tissue
1
primary cell
Organ
53
liver
15
blood
15
bodily fluid
11
pancreas
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
92
AMP
Genome assembly (visualization)
81
GRCh38
73
hg19
Lab
87
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
FAIRE-seq
month_released!
May, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
92 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
islet of Langerhans
4
1
body of pancreas
2
2
brain
2
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primary cell
pancreatic cell
1
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