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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ATAC-seq
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
15
ChIP-seq
Assay category
68
DNA accessibility
60
Transcription
15
DNA binding
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
683
February, 2021
400
November, 2017
381
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
93
July, 2019
87
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
54
zippedFastqFolder
50
bed narrowPeak
41
fastq
39
bam
34
bigWig
14
tagAlign
7
txt
6
bigBed narrowPeak
4
bed broadPeak
1
bed bed3+
Organism
143
Homo sapiens
Biosample type
89
tissue
54
primary cell
Organ
109
pancreas
epithelium
40
liver
16
brain
2
musculature of body
1
adipose tissue
1
connective tissue
1
spleen
Project
89
AMP
54
HPAP
Genome assembly (visualization)
52
hg19
14
GRCh38
Lab
54
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
4
missing controlled_by
assay_title!
FAIRE-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
143 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
tissue
liver
20
20
islet of Langerhans
19
6
brain
15
body of pancreas
4
skeletal muscle tissue
1
1
+ See 3 more…
primary cell
Langerhans cell
33
21
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