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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
18
DNase-seq
8
snATAC-seq
1
ATAC-seq
1
pCHi-C
Assay category
60
DNA binding
27
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
January, 2019
18
June, 2019
15
November, 2018
8
January, 2021
1
January, 2018
1
March, 2020
Available data
78
bam
73
bigWig
72
bed narrowPeak
72
bigBed narrowPeak
60
fastq
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
1
tsv
Organism
88
Homo sapiens
Biosample type
61
cell line
19
tissue
8
primary cell
Organ
944
pancreas
791
liver
684
connective tissue
523
epithelium
491
adipose tissue
393
heart
353
kidney
285
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
8
T1D
Genome assembly (visualization)
73
hg19
72
GRCh38
Lab
80
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
snATAC-seq
ATAC-seq
pCHi-C
cell line
GM12878
60
1
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
gastric (mucosa of stomach)
1
primary cell
peripheral blood mononuclear cell
8
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