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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 2pCHi-C
  • FAIRE-seq
Assay category
  • 218DNA binding
  • 36DNA accessibility
  • 24Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • 31control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 86October, 2019
  • 30June, 2019
  • 28May, 2019
  • 17July, 2019
  • 16October, 2017
  • 12February, 2020
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 242bam
  • 221bigWig
  • 202bed narrowPeak
  • 126bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 285Homo sapiens
Biosample type
  • 264tissue
  • 21primary cell
Organ
  • 944pancreas
  • 791liver
  • 684connective tissue
  • 523epithelium
  • 491adipose tissue
  • 393heart
  • 353kidney
  • 285brain
  • 235vasculature
  • 229blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 21vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 285AMP
Genome assembly (visualization)
  • 217GRCh38
  • 163hg19
Lab
  • 285AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
assay_title!
  • FAIRE-seq
BIOSAMPLE
ASSAY

285 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain2014111
layer of hippocampus23
caudate nucleus1511
substantia nigra161
temporal lobe1511
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell311
brain pericyte11
cerebellar granule cell2
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