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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
38
DNase-seq
8
ATAC-seq
7
total RNA-seq
6
Hi-C
FAIRE-seq
1
WGBS
Assay category
83
DNA binding
46
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
64
histone
64
histone modification
43
broad histone mark
21
narrow histone mark
19
control
Date released
89
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
133
bam
105
bigWig
104
bed narrowPeak
96
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
7
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
143
Homo sapiens
Biosample type
122
tissue
21
primary cell
Organ
936
pancreas
791
liver
683
connective tissue
522
epithelium
490
adipose tissue
393
heart
353
kidney
285
brain
235
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
19
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
143
AMP
Genome assembly (visualization)
112
hg19
108
GRCh38
Lab
143
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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primary cell
endothelial cell of umbilical vein
17
2
2
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