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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
RRBS
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
6
3D chromatin structure
3
Transcription
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
22
August, 2017
4
July, 2019
3
March, 2020
2
February, 2020
2
June, 2019
2
May, 2019
2
May, 2022
1
January, 2018
Available data
15
bigWig
15
tagAlign
14
bed narrowPeak
13
bed broadPeak
4
bam
3
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
bigBed narrowPeak
1
txt
Organism
38
Homo sapiens
Biosample type
36
tissue
2
primary cell
Organ
258
liver
258
pancreas
224
epithelium
145
kidney
125
heart
116
connective tissue
92
bone element
67
adipose tissue
67
brain
54
eye
44
vasculature
43
blood vessel
38
musculature of body
26
limb
20
lung
13
artery
12
nerve
10
vein
9
spleen
8
skeleton
7
blood
7
bodily fluid
7
embryo
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
70
hg19
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
GRO-seq
RRBS
assembly!
GRCh38
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
Hi-C
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
muscle of leg
2
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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