Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1019
total RNA-seq
907
ChIP-seq
227
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
small RNA-seq
15
Hi-C
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1215
Transcription
907
DNA binding
427
DNA accessibility
27
DNA methylation
15
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
74
October, 2018
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2024
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1882
bam
1772
bigWig
1076
tsv
966
bed narrowPeak
561
bigBed narrowPeak
349
fastq
238
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2700
Homo sapiens
Biosample type
2709
tissue
839
primary cell
657
cell line
343
in vitro differentiated cells
9
stem cell
Organ
547
connective tissue
488
adipose tissue
447
pancreas
360
liver
312
heart
298
kidney
264
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
78
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2639
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1857
GRCh38
1725
hg19
Lab
2414
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
GRO-seq
RRBS
lab.title!
Kyle Gaulton, UCSD
month_released!
March, 2019
BIOSAMPLE
ASSAY
2709 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
281
71
35
6
1
4
1
2
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
+ See 175 more…
See all biosamples
Download